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Journal Articles:

Chenillat, F., P. Riviere, X. Capet, P. J. S. Franks, and B. Blanke.  California Coastal Upwelling Onset Variability: Cross-Shore and Bottom-Up Propagation in the Planktonic Ecosystem. PLoS ONE, 8. (2013)

Davison, P., D. M. Checkley, A. J. Koslow, and J. Barlow.  Carbon export mediated by mesopelagic fishes in the northeast Pacific Ocean. Progress in Oceanography, 116, 14-30. (2013)

Deyle, E. R., and Coauthors.  Predicting climate effects on Pacific sardine. Proceedings of the National Academy of Sciences, 110, 6430-6435. (2013)

Dupont, C. L., J. Larsson, S. Yooseph, K. Ininbergs, J. Goll, J. Asplund-Samuelsson, J. P. McCrow, N. Celepli, L. Z. Allen, M. Ekman, A. J. Lucas, Å. Hagström, M. Thiagarajan, B. Brindefalk, A. R. Richter, A. F. Andersson, A. Tenney, D. Lundin, A. Tovchigrechko, J. A. A. Nylander, D. Brami, J. H. Badger, A. E. Allen, D. B. Rusch, J. Hoffman, E. Norrby, R. Friedman, J. Pinhassi, J. C. Venter, and B. Bergman.  Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition. PLoS ONE, 9. (2014)

Emerson, S.  Annual net community production and the biological carbon flux in the ocean. Global Biogeochemical Cycles, 28, 14-28. (2014)

Franks, P. J. S., E. Di Lorenzo, N. L. Goebel, F. Chenillat, P. Riviere, C. A. Edward, and A. J. Miller.  Modeling Physical-Biological Responses to Climate Change in the California Current System. Oceanography, 26, 26-33. (2013)

Freibott, A., L. Linarcre, and M. R. Landry.  A slide preparation technique for light microscopy analysis of ciliates preserved in acid Lugol's fixative. Limnology and Oceanography: Methods, 12, 54-62. (2014)

Jacobson, L. D., and S. McClatchie.  Comment on temperature-dependent stock–recruit modeling for Pacific sardine (Sardinops sagax) in Jacobson and MacCall (1995), McClatchie et al. (2010), and Lindegren and Checkley (2013). Canadian Journal of Fisheries and Aquatic Sciences, 70, 1566-1569. (2013) 

Kaplan , I. C., C. J. Brown, E. A. Fulton, I. A. Gray, J. C. Field and A. D. M. Smith.  Impacts of depleting forage species in the California Current. Environmental Conservation 40(04):380-393. (2013)

Kharbush, J. J., J. A. Ugalde, S. L. Hogle, E. E. Allen, and L. I. Aluwihare.  Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California Current. Applied and environmental microbiology, 79, 7491-7501. (2013)

Kim, S. Y., B. D. Cornuelle, E. J. Terrill, B. Jones, L. Washburn, M. A. Moline, J. D. Paduan, N. Garfield, J. L. Largier, G. Crawford, and P. Michael Kosro.  Poleward propagating subinertial alongshore surface currents off the U.S. West Coast. Journal of Geophysical Research: Oceans, 118, 6791-6806. (2013)

Koslow, A. J., and J. Couture.  Ocean sciences: Follow the fish. Nature, 502, 163-164. (2013)

Koslow, A. J., R. Goericke, and W. Watson.  Fish assemblages in the Southern California Current: relationships with climate, 1951–2008. Fisheries Oceanography, 22, 207-219. (2013)

Lindegren, M., D. M. Checkley, T. Rouyer, A. D. MacCall, and N. C. Stenseth.  Climate, fishing, and fluctuations of sardine and anchovy in the California Current. Proceedings of the National Academy of Sciences of the United States of America 110(33): 13672-13677. (2013)

Luo, Jessica, Y., Grassian, B., Tang, D., Irisson, J., Greer, A.T., Guigand, C.M., McClatchie, S., Cowen, R.K.  Environmental drivers of  the fine-scale distribution of a gelatinous zooplankton community across a meso-scale front. Marine Ecology Progress Series 510: 129-149. (2014) 

Mateos, E., S. G. Marinone, and M. F. Lavín.  Numerical modeling of the coastal circulation off northern Baja California and southern California. Continental Shelf Research, 58, 50-66. (2013)

McClatchie, Sam, Field, J.C., Duffy-Anderson, J., Peterson, W.T., Watson, W., Lyczkowski-Shultz, J., Hare, J.A., Griffith, D., Weber, E.D., Hanisko, D.S., Zapfe, G., Goericke, R. Long time series in U.S. fisheries oceanography. Oceanography. 27(4): 48–67. (2014)

Meinvielle, M., and G. C. Johnson.  Decadal water-property trends in the California Undercurrent, with implications for ocean acidification. Journal of Geophysical Research: Oceans, 118, 6687-6703. (2013)

Munro, D. R., P. D. Quay, L. W. Juranek, and R. Goericke.  Biological production rates off the southern California coast estimated from triple O2 isotopes and O2:Ar gas ratios. Limnology and Oceanography, 58, 1312-1328. (2013)

Navarro, G., and J. Ruiz.  Hysteresis conditions the vertical position of deep chlorophyll maximum in the temperate ocean. Global Biogeochemical Cycles, 27, 1013–1022. (2013)

Nieto, Karen, McClatchie, S., Weber, E.D and C. Lennert-Cody. Effect of mesoscale eddies and streamers on sardine spawning habitat and recruitment success off southern and central California. Journal of Geophysical Research doi: 10.1002/2014JC010251. (2014)

Ohman, M. D., K. Barbeau, P. J. S. Franks, R. Goericke, M. R. Landry, and A. J. Miller.  Ecological transitions in a coastal upwelling ecosystem. Oceanography, 26, 210-219. (2013)

Ohman, M. D., D. L. Rudnick, A. Chekalyuk, R. E. Davis, R. A. Feeley, M. Kahru, H.-J. Kim, M. R. Landry, T. R. Martz, C. L. Sabine, and U. Send.  Autonomous ocean measurements in the California Current Ecosystem. Oceanography, 26, 18-25. (2013)

Palacios, D. M., E. L. Hazen, I. D. Schroeder, and S. J. Bograd.  Modeling the temperature-nitrate relationship in the coastal upwelling domain of the California Current. Journal of Geophysical Research: Oceans, 118, 3223-3239. (2013)

Petrik, C. M., G. A. Jackson, and D. M. Checkley Jr.  Aggregates and their distributions determined from LOPC observations made using an autonomous profiling float. Deep Sea Research Part I: Oceanographic Research Papers 74:64-81. (2013)

Ralston, S. and I. J. Stewart.  Anomalous distributions of pelagic juvenile rockfish on the U.S. West Coast in 2005 and 2006. California Cooperative Oceanic Fisheries Investigations Reports 54:155-166. (2013)

Roach, L. D., C. D. Charles, D. B. Field, and T. P. Guilderson.  Foraminiferal radiocarbon record of northeast Pacific decadal subsurface variability. Journal of Geophysical Research: Oceans, 118, 4317-4333. (2013)

Smith, K. L., H. A. Ruhl, M. Kahru, C. L. Huffard, and A. D. Sherman.  Deep ocean communities impacted by changing climate over 24 y in the abyssal northeast Pacific Ocean. Proceedings of the National Academy of Sciences. (2013)

Stock, C. A., J. P. Dunne, and J. G. John.  Global-scale carbon and energy flows through the marine planktonic food web: An analysis with a coupled physical–biological model. Progress in Oceanography, 120, 1-28. (2014)

Sydeman, W. J., S. A. Thompson, M. García-Reyes, M. Kahru, W. T. Peterson, and J. L. Largier.  Multivariate ocean-climate indicators (MOCI) for the central California Current: Environmental change, 1990–2010. Progress in Oceanography, 120, 352-369. (2014)

Weber, E. D. and T. Moore.  Corrected conversion algorithms for the CalCOFI station grid and their implementation in several computer languages. California Cooperative Oceanic Fisheries Investigations Reports 54:37-71. (2013)

Wells, B. K., I. D. Schroeder, J. A. Santora, E. L. Hazen, S. J. Bograd, E. P. Bjorkstedt, V. Loeb, S. McClatchie, E. D. Weber, W. Watson, A. R. Thompson, W. T. Peterson, R. D. Brodeur, J. Harding, J. Field, K. Sakuma, S. Hayes, N. Mantua, W. J. Sydeman, M. Losekoot, S. A. Thompson, J. L. Largier, S. Y. Kim, F. P. Chavez, C. Barchelo, P. Warzybok, R. Bradley, J. Jahncke, R. Goericke, G. S. Campbell, J. A. Hildebrand, S. R. Melin, R. L. Delong, J. Gomez-Valdez, B. Lavaniegos, G. Gaxiola-Castro, R. T. Golightly, S. R. Schneider, N. C. Lo, R. M. Suryan, A. J. Gladics, C. Horton, A., J. Fisher, C. Morgan, J. Peterson, E. A. Daly, T. D. Auth, and J. Abell.  State of the California Current 2012-13: No Such Thing as as "Average" Year. California Cooperative Oceanic Fisheries Investigations Reports, 54, 37-71. (2013)

Whitney, F. A., S. J. Bograd, and T. Ono.  Nutrient enrichment of the subarctic Pacific Ocean pycnocline. Geophysical Research Letters, 40, 2200-2205. (2013)

Zwolinski, J. P., and D. A. Demer.   Environmental and parental control of Pacific sardine (Sardinops sagax) recruitment. ICES Journal of Marine Science: Journal du Conseil. (2013)

 

Books/Articles-in-Books:

Lo, N. C., and B. E. Fissel.  Stock Assessment Through Egg Production Methods in the US. Biology and Ecology of Sardines and Anchovies, K. Ganias, Ed., CRC Press: Chapter 8, 27pp. (2014)

McClatchie, S. Regional ?sheries oceanography of the California Current System and the CalCOFI program. Springer: 299 pp. (2014) 

 

Reports:

Hazen, E. L., I. D. Schroeder, J. Peterson, W. T. Peterson, W. J. Sydeman, S. A. Thompson, B. K. Wells and S. J. Bograd.  Oceanographic and climatic drivers and pressures. Integrated ecosystem assessment of the California Current: Phase II report 2012. P. S. Levin, B. K. Wells and M. B. Sheer.  NOAA National Marine Fisheries Service, La Jolla, CA. (2013)

Wells, B. K., R. D. Brodeur, J. C. Field, E. D. Weber, A. R. Thompson, S. McClatchie, P. R. Crone, K. T. Hill and C. Barcelo.  Coastal Pelagics and Forage Fishes. California Current Integrated Ecosystem Assessment: Phase III Report, La Jolla, CA. (2014)

 

Conference Proceedings/Workshops:

Barron, J. A., D. Bukry, D. B. Field, and B. Finney.  Response of diatoms and silicoflagellates to climate change and warming in the California Current during the past 250 years and the recent rise of the toxic diatom Pseudo-nitzschia australis.  25th Pacific Climate Workshop. Quaternary International, Pacific Grove, CA. (2013)

Bowlin, N. M., S. McClatchie, A. R. Thompson, P. Hastings, and W. Watson.  Ontogeny as a factor affecting availability of mesopelagic fishes for predators.in CalCOFI Annual Conference, La Jolla, CA. (2013)

Campbell, G. S., K. Whitaker, L. Thomas, A. Douglas, J. Calambokidis, and J. A. Hildebrand.  Inter-annual and seasonal trends in cetacean distribution, density and abundance in waters off southern California. CALCOFI Conference Presentation, La Jolla, CA. (2013)

Field, J. and A. D. MacCall.  A historical perspective on the evolution of ecosystem-based fisheries management in the California Current.in CalCOFI Annual Conference, La Jolla, CA. (2013)

Kowalewska-Kalkowska, H., M. Wereszka, and M. Stramska.  Particulate organic carbon in the global ocean: comparison of ocean color satellite and in situ estimates.  European Geosciences Union General Assembly 2013, Vienna, Austria. (2013)

Laake, J., Melin, S.R., Delong, R.L., Orr, A. and Harris, J.  Female California Sea Lion summer diet and pup growth on San Miguel Island, CalCOFI Annual Conference, La Jolla, CA. (2013)

McClatchie, S., Thompson, A.R., Watson, W. Secular and inter-annual changes in the spawning habitat of forage fish off California, CalCOFI Annual Conference La Jolla, CA. (2013)

Pedler, B. E., L. I. Aluwihare, and F. Azam.  Alteration And Efficient Removal Of Ambient Marine Dissolved Organic Matter By A Single Marine Alteromonas Strain.in Ocean Sciences Meeting, Honolulu, HI. (2014)

Ralston, S., J. Field, and K. Sakuma.  Long-term variation in a Central California epipelagic forage assemblage.in CalCOFI Annual Conference, La Jolla, CA. (2013)

Reed, E. M. and B. K. Macewicz.  Update analysis of age, length, and maturity of Pacific mackerel (Scomber japonicus) collected off San Diego, CA 2009-2012.in CalCOFI Annual Conference, La Jolla, CA. (2014)

Snodgrass, O.E. and Dewar, H.  Foraging Ecology of Tunas and Opah in the California Current, CalCOFI Annual Conference, La Jolla, CA. (2013)

Thompson, A.R., Watson, W., Bowlin, N.M., Adam, T., McClatchie, S. and Weber, E.D.  Inter-decadal changes in biodiversity in larval fish assemblages off southern California CalCOFI Annual Conference, La Jolla, CA. (2013)

Weber, E.D. and Thompson, A.R.  Ichthyoplankton community composition as a predictor of Pacific Sardine ( Sardinops sagax ) recruitment success, CalCOFI Annual Conference, La Jolla, CA. (2013)

Zwolinski, J. P., D. A. Demer, G. Cutter, B. Elliot, S. Mau, D. Murfin, J. S. Renfree, K. Stierhoff, T. S. Sessions, and B. K. Macewicz.  Distribution and abundance of forage fish species based on acoustic-trawl surveys between 2006 and 2013.in CalCOFI Annual Conference, La Jolla, CA. (2013)

 

Ph.D. Dissertations:

Asch, Rebecca G.  Interannual-to-Decadal Changes in Phytoplankton Phenology, Fish Spawning Habitat, and Larval Fish Phenology. PhD Dissertation, SIO, UCSD. 234pages. (2013)

Bain, R.   Monte Carlo Likelihood Estimation For Conditional Autoregressive Models With Application To Sparse Spatiotemporal Data. Florida State University, Tallahassee, FL. (2013)

Powell, Jesse.  Ocean fronts in the Southern California Current System and their role in structuring zooplankton distributions, diel vertical migration, and size composition. PhD Dissertation. SIO, UCSD. (2013)

Taylor, A. G.  Biomass structure and environmental relationships for phytoplankton communities in the southern California Current and adjacent ocean ecosystems UCSD, Scripps Institution of Oceanography, La Jolla, CA. (2014)

 

Submitted and In Press:

Barron, J. A., D. Bukry, and I. L. Hendy.  High-resolution paleoclimatology of the Santa Barbara Basin during the Medieval Climate Anomaly and early Little Ice Age based on diatom and silicoflagellate assemblages in Kasten core SPR0901-02KC. Quaternary International. (2014)

Bograd, S. J., A. W. Leising, and E. L. Hazen.  Oceanographic Drivers. Ecosystems of California - A Source Book, H. Mooney, and E. Zavaleta, Eds., University of California Press. (2014)

Bograd, S. J., E. L. Hazen, A. W. Maxwell, A. W. Leising, H. Bailey, and R. D. Brodeur.  Offshore Ecosystems. Ecosystems of California - A Source Book, University of California Press. (2014)

Bograd, S. J., M. P. Buil, E. D. Lorenzo, C. G. Castro, I. D. Schroeder, R. Goericke, C. R. Anderson, C. Benitez-Nelson, and F. A. Whitney.  Changes in source Waters to the southern California bight.  Deep Sea Research Part II: Topical Studies in Oceanography.  (2014)

Campbell, G. S., K. Whitaker, L. Thomas, A. Douglas, J. Calambokidis and J. A. Hildebrand.  Inter-annual and seasonal trends in cetacean distribution, density and abundance in waters off southern California. Deep Sea Research Part II: Topical Studies in Oceanography. (In Press)

Davis, A., and E. Di Lorenzo.  Interannual forcing mechanisms of California Current transports I: Meridional Currents. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)

Douglas, A., J. Calambokidis, L. Munger, M. Soldevilla, M. Ferguson, A. Havron, D. Camacho, G. S. Campbell, and J. A. Hildebrand.  Seasonal distribution and abundance of cetaceans off Southern California: results from CalCOFI cruises from 2004-2008. Fishery Bulletin. (In Press)

Glaser, S. M., M. J. Fogarty, H. Liu, I. Altman, C.-H. Hsieh, L. Kaufman, A. D. MacCall, A. A. Rosenberg, H. Ye, and G. Sugihara.  Complex dynamics may limit prediction in marine fisheries. Fish and Fisheries. (2013)

Jacox, M. G., C. A. Edwards, M. Kahru, D. L. Rudnick, and R. M. Kudela.  The potential for improving remote primary productivity estimates through subsurface chlorophyll and irradiance measurement. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)

Kahru, M., Z. Lee, R. M. Kudela, M. Manzano-Sarabia, and B. Greg Mitchell.  Multi-satellite time series of inherent optical properties in the California Current. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)

Koslow, J. A., P. Davison, A. Lara-Lopez, and M. D. Ohman.  Epipelagic and mesopelagic fishes in the southern California Current System: Ecological interactions and oceanographic influences on their abundance. Journal of Marine Systems. (2014)

Kuhn, C. E., and D. P. Costa.  Interannual variation in the at-sea behavior of California sea lions (Zalophus californianus). Marine Mammal Science. (2014)

Larsson, J., N. Celepli, K. Ininbergs, C. L. Dupont, S. Yooseph, B. Bergman, and M. Ekman.  Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea. International Society for Microbial Ecology. (2014)

Mengerink, K. J., C. L. Van Dover, J. Ardron, M. Baker, E. Escobar-Briones, K. Gjerde, A. J. Koslow, E. Ramirez-Llodra, A. Lara-Lopez, D. Squires, T. Sutton, A. K. Sweetman and L. Levin.  A call for deep ocean stewardship. Science. (2014)

Miller, A. J., H. Song, and A. C. Subramanian.  The physical oceanographic environment during the CCE-LTER Years: Changes in climate and concepts. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)

Nieto, K. M., S. McClatchie, E. D. Weber and C. Lennert-Cody.  Effect of mesoscale eddies and streamers on sardine spawning habitat and recruitment success off southern and central California. Journal of Geophysical Research.  (In Press)

Powell, J. R., and M. D. Ohman.  Co-variability of zooplankton gradients with glider-detected density fronts in the Southern California Current System. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)

Sydeman, W. J., S. A. Thompson, J. A. Santora, A. J. Koslow, R. Goericke, and M. D. Ohman.  Climate–ecosystem change off southern California: Time-dependent seabird predator–prey numerical responses. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)

Taylor, A. G., M. R. Landry, K. E. Selph, and J. J. Wokuluk.  Temporal and spatial patterns of microbial community biomass and composition in the Southern California Current Ecosystem. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)

Thompson, A. R., T. D. Auth, R. D. Brodeur, N. M. Bowlin and W. Watson.  Dynamics of larval fish assemblages in the California Current System: A comparative study between Oregon and southern California. Marine Ecology Progress Series. (In Press)

 

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